| 3D computer graphic modeling |
|
https://openminds.ebrains.eu/instances/technique/3DComputerGraphicModeling |
|
JSON-LD
|
| 3D polarized light imaging |
'3D polarized light imaging' (synonym: 3D-PLI) is a 3D reconstruction process of high-resoluted image data originating from polorized light microscopy. |
https://openminds.ebrains.eu/instances/technique/3DPolarizedLightImaging |
|
JSON-LD
|
| 3D scanning |
|
https://openminds.ebrains.eu/instances/technique/3DScanning |
|
JSON-LD
|
| 4-points congruent sets alignment |
4-points congruent sets alignment is a fast and robust alignment technique for 3D point sets without pre-filtering or denoising the data, even if the data are noisy and/or contaminated with outliers ([Aiger et al., 2008](https://doi.org/10.1145/1360612.1360684)). |
https://openminds.ebrains.eu/instances/technique/4PointsCongruentSetsAlignment |
|
JSON-LD
|
| activation likelihood estimation |
An 'activation likelihood estimation' is a coordinate-based meta-analysis of neuroimaging data that determines the above-chance convergence of activation probabilities between experiments (i.e., not between foci). [adapted from [Eickhoff et al., 2011](https://dx.doi.org/10.1016%2Fj.neuroimage.2011.09.017)] |
https://openminds.ebrains.eu/instances/technique/activationLikelihoodEstimation |
|
JSON-LD
|
| activity modulation technique |
|
https://openminds.ebrains.eu/instances/technique/activityModulationTechnique |
|
JSON-LD
|
| affine image registration |
A 'affine image registration' is a process of bringing a set of images into the same coordinate system using affine transformation. |
https://openminds.ebrains.eu/instances/technique/affineImageRegistration |
|
JSON-LD
|
| affine transformation |
An 'affine transformation' is a specific linear transformation using combinations of rotations, translations, reflections, scaling and shearing to map coordinates between two coordinate spaces. |
https://openminds.ebrains.eu/instances/technique/affineTransformation |
|
JSON-LD
|
| anaesthesia administration |
|
https://openminds.ebrains.eu/instances/technique/anaesthesiaAdministration |
|
JSON-LD
|
| anaesthesia monitoring |
|
https://openminds.ebrains.eu/instances/technique/anaesthesiaMonitoring |
|
JSON-LD
|
| anaesthesia technique |
|
https://openminds.ebrains.eu/instances/technique/anaesthesiaTechnique |
|
JSON-LD
|
| anatomical delineation technique |
An anatomical delineation technique is any process that identifies the boundaries of an anatomical entity and applies those boundaries to specific data. |
https://openminds.ebrains.eu/instances/technique/anatomicalDelineationTechnique |
|
JSON-LD
|
| anterograde tracing |
Anterograde tracing is a technique used to trace axonal projections from their source (the cell body or soma) to their point of termination (the synapse). |
https://openminds.ebrains.eu/instances/technique/anterogradeTracing |
|
JSON-LD
|
| autoradiography |
'Autoradiography' is a photography technique that creates images of a radioactive source (e.g., molecules or fragments of molecules that have been radioactively labeled) by the direct exposure to an imaging media (e.g., X-ray film or nuclear emulsion) |
https://openminds.ebrains.eu/instances/technique/autoradiography |
|
JSON-LD
, Interlex
|
| average linkage clustering |
|
https://openminds.ebrains.eu/instances/technique/averageLinkageClustering |
|
JSON-LD
|
| avidin-biotin complex staining |
|
https://openminds.ebrains.eu/instances/technique/avidinBiotinComplexStaining |
|
JSON-LD
|
| beta-galactosidase staining |
|
https://openminds.ebrains.eu/instances/technique/beta-galactosidaseStaining |
|
JSON-LD
|
| bias field correction |
A 'bias field correction' is a mathematical technique to remove a corrupting, low frequency signal from magnetic resonance images. This bias field signal is typically caused by inhomogeneities in the magnetic fields of the magnetic resonance imaging machine. |
https://openminds.ebrains.eu/instances/technique/biasFieldCorrection |
|
JSON-LD
|
| biocytin staining |
In 'biocytin staining' the chemical compound biocytin is used to highlight morphological details of nerve cells. |
https://openminds.ebrains.eu/instances/technique/biocytinStaining |
|
JSON-LD
|
| blood sampling |
'Blood sampling' is the process of obtaining blood from a body for purpose of medical diagnosis and/or evaluation of an indication for treatment, further medical tests or other procedures. |
https://openminds.ebrains.eu/instances/technique/bloodSampling |
http://purl.obolibrary.org/obo/OBI_1110095 |
JSON-LD
, Interlex
|
| bootstrapping |
|
https://openminds.ebrains.eu/instances/technique/bootstrapping |
|
JSON-LD
|
| boundary-based registration |
The term 'boundary-based registration' refers to feature based image registration methods which utilize a boundary which can be identified in the source and target image. |
https://openminds.ebrains.eu/instances/technique/boundaryBasedRegistration |
|
JSON-LD
|
| brightfield microscopy |
Brightfield microscopy is an optical microscopy techniques, in which illumination light is transmitted through the sample and the contrast is generated by the absorption of light in dense areas of the specimen. |
https://openminds.ebrains.eu/instances/technique/brightfieldMicroscopy |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/238 |
JSON-LD
, Interlex
|
| calcium imaging |
|
https://openminds.ebrains.eu/instances/technique/calciumImaging |
|
JSON-LD
|
| callosotomy |
|
https://openminds.ebrains.eu/instances/technique/callosotomy |
|
JSON-LD
|
| cell attached patch clamp |
'Cell-attached patch clamp' is an intracellular electrophysiology technique that fully preserves the intracellular integrity by forming a megaohm or gigaohm seal, leaving the cell membrane intact. |
https://openminds.ebrains.eu/instances/technique/cellAttachedPatchClamp |
|
JSON-LD
|
| CLARITY/TDE |
|
https://openminds.ebrains.eu/instances/technique/CLARITY_TDE |
|
JSON-LD
|
| cluster analysis |
|
https://openminds.ebrains.eu/instances/technique/clusterAnalysis |
|
JSON-LD
|
| combined volume–surface registration |
The term 'combined volume-surface registration' refers to an image registration framework which utilizes information from the brain surface and the brain volume to perform the registration (cf. [Postelnicu et al. (2009)](https://doi.org/10.1109/TMI.2008.2004426)). |
https://openminds.ebrains.eu/instances/technique/combinedVolumeSurfaceRegistration |
|
JSON-LD
|
| communication profiling |
|
https://openminds.ebrains.eu/instances/technique/communicationProfiling |
|
JSON-LD
|
| computer tomography |
'Computer tomogoraphy' is a noninvasive medical imaging technique where a computer generates multiple X-ray scans to obtain detailed internal 3D image of the body. |
https://openminds.ebrains.eu/instances/technique/computerTomography |
|
JSON-LD
|
| confocal microscopy |
Confocal microscopy is a specialized fluorescence microscopy technique that uses pinholes to reject out-of-focus light. |
https://openminds.ebrains.eu/instances/technique/confocalMicroscopy |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/157 |
JSON-LD
, Interlex
|
| conjunction analysis |
|
https://openminds.ebrains.eu/instances/technique/conjunctionAnalysis |
|
JSON-LD
|
| connected-component analysis |
'connected-component analysis' is an algorithmic application of graph theory, where subsets of connected components are uniquely labeled based on a given heuristic. [adapted from: [wikipedia](https://en.wikipedia.org/wiki/Connected-component_labeling)] |
https://openminds.ebrains.eu/instances/technique/connected-componentAnalysis |
|
JSON-LD
|
| connectivity based parcellation technique |
|
https://openminds.ebrains.eu/instances/technique/connectivityBasedParcellationTechnique |
|
JSON-LD
|
| contrast agent administration |
A 'contrast agent administration' is a (typically) oral or intraveneous administration of a chemical compound to improve the visibility of internal body structures of a subject in a subsequent imaging technique. |
https://openminds.ebrains.eu/instances/technique/contrastAgentAdministration |
|
JSON-LD
|
| contrast enhancement |
|
https://openminds.ebrains.eu/instances/technique/contrastEnhancement |
|
JSON-LD
|
| convolution |
In functional analysis, 'convolution' is a mathematical operation on two functions (f and g) producing a third function (f * g) that expresses how the shape of one is modified by the other. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Convolution)] |
https://openminds.ebrains.eu/instances/technique/convolution |
|
JSON-LD
|
| correlation analysis |
|
https://openminds.ebrains.eu/instances/technique/correlationAnalysis |
|
JSON-LD
|
| cortico-cortical evoked potential mapping |
Cortico-cortical evoked potential (CCEP) mapping is used to identify the effective connectivity between distinct neuronal populations based on multiple CCEP measurements across (parts of) the brain in response to direct electrical stimulation (typically at various locations). |
https://openminds.ebrains.eu/instances/technique/cortico-corticalEvokedPotentialMapping |
|
JSON-LD
|
| covariance analysis |
|
https://openminds.ebrains.eu/instances/technique/covarianceAnalysis |
|
JSON-LD
|
| craniotomy |
|
https://openminds.ebrains.eu/instances/technique/craniotomy |
|
JSON-LD
|
| cryosectioning |
Cutting of specimen in cryo/freezing conditions typcially resulting in micromillimeter thin slices. |
https://openminds.ebrains.eu/instances/technique/cryosectioning |
|
JSON-LD
|
| current clamp |
Current clamp is a technique in which the amount of current injected into the cell is controlled, which allows for the detection of changes in the transmembrane voltage resulting from ion channel activity. |
https://openminds.ebrains.eu/instances/technique/currentClamp |
|
JSON-LD
|
| current source density analysis |
|
https://openminds.ebrains.eu/instances/technique/currentSourceDensityAnalysis |
|
JSON-LD
|
| cytoarchitectonic mapping |
'Cytoarchitectonic mapping' is a delineation technique that defines regional borders based on histological analysis of the cellular composition of the studied tissue. |
https://openminds.ebrains.eu/instances/technique/cytoarchitectonicMapping |
|
JSON-LD
|
| DAB staining |
In a 'DAB staining', the organic compound DAB (3, 3'-diaminobenzidine) is oxidized in presence of peroxidase and hydrogen peroxide resulting in deposition of a brown, alcohol-insoluble precipitate which can be used in immunohistochemical and blotting applications. |
https://openminds.ebrains.eu/instances/technique/DABStaining |
|
JSON-LD
|
| DAPi staining |
A nuclear-specific staining technique where DAPi (4′,6-diamidino-2-phenylindole) is used as a dye. |
https://openminds.ebrains.eu/instances/technique/DAPiStaining |
|
JSON-LD
|
| deep learning |
|
https://openminds.ebrains.eu/instances/technique/deepLearning |
|
JSON-LD
|
| density measurement |
|
https://openminds.ebrains.eu/instances/technique/densityMeasurement |
|
JSON-LD
|
| dictionary learning |
'Dictionary learning' is a branch of signal processing and machine learning that aims at finding a frame (called dictionary) in which some training data admits a sparse representation. |
https://openminds.ebrains.eu/instances/technique/dictionaryLearning |
|
JSON-LD
|
| diffeomorphic registration |
'Diffeomorphic registration' refers to a suite of algorithms that register or build correspondences between dense coordinate systems in medical imaging by ensuring the solutions are diffeomorphic. |
https://openminds.ebrains.eu/instances/technique/diffeomorphicRegistration |
|
JSON-LD
|
| diffusion fixation technique |
Diffusion fixation is a fixation technique to preserve specimen permanently as faithfully as possible compared to the living state by submerging specimen in a fixative. |
https://openminds.ebrains.eu/instances/technique/diffusionFixationTechnique |
|
JSON-LD
|
| diffusion tensor imaging |
|
https://openminds.ebrains.eu/instances/technique/diffusionTensorImaging |
|
JSON-LD
|
| diffusion-weighted imaging |
|
https://openminds.ebrains.eu/instances/technique/diffusionWeightedImaging |
|
JSON-LD
|
| DNA methylation analysis |
A 'DNA methylation analysis' studies chromosomal patterns of DNA or histone modification by methyl groups ([modified from Nature.com](https://www.nature.com/subjects/methylation-analysis)). |
https://openminds.ebrains.eu/instances/technique/DNAMethylationAnalysis |
|
JSON-LD
, Interlex
|
| DNA sequencing |
'DNA sequencing' refers to a group of techniques that are used to determine the order of nucleotides (nucleic acid sequence) in DNA. [adapted from [wikipedia](https://en.wikipedia.org/wiki/DNA_sequencing)] |
https://openminds.ebrains.eu/instances/technique/DNASequencing |
http://purl.obolibrary.org/obo/OBI_0000626 |
JSON-LD
, Interlex
|
| dual-view inverted selective plane illumination microscopy |
Dual-view inverted selective plane illumination microscopy is a specialized light sheet microscopy technique that allows for dual views of the samples while mounted on an inverted microscope. |
https://openminds.ebrains.eu/instances/technique/dualViewInvertedSelectivePlaneIlluminationMicroscopy |
|
JSON-LD
|
| echo planar pulse sequence |
In magnetic resonance imaging, a 'echo-planar pulse sequence' is a contrasting technique where each radio frequency field (RF) excitation is followed by a train of gradient echoes with different spatial encoding allowing for very rapid scanning. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Physics_of_magnetic_resonance_imaging#Echo-planar_imaging)] |
https://openminds.ebrains.eu/instances/technique/echoPlanarPulseSequence |
|
JSON-LD
|
| electrocardiography |
Electrocardiography is a non-invasive technique used to record the electrical activity of a heart using electrodes placed on the skin. [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Electrocardiography)] |
https://openminds.ebrains.eu/instances/technique/electrocardiography |
|
JSON-LD
|
| electrocorticography |
'Electrocorticography', short ECoG, is an intracranial electroencephalography technique in which electrodes are placed (subdural or epidural) on the exposed surface of the brain to record electrical activity from the cerebral cortex. |
https://openminds.ebrains.eu/instances/technique/electrocorticography |
|
JSON-LD
|
| electroencephalography |
|
https://openminds.ebrains.eu/instances/technique/electroencephalography |
|
JSON-LD
|
| electromyography |
|
https://openminds.ebrains.eu/instances/technique/electromyography |
|
JSON-LD
|
| electron microscopy |
Electron microscopy describes any microscopy technique that uses electrons to generate contrast. |
https://openminds.ebrains.eu/instances/technique/electronMicroscopy |
http://uri.interlex.org/tgbugs/uris/readable/technique/electronMicroscopy |
JSON-LD
, Interlex
|
| electron tomography |
Electron tomography is a microscopy technique that takes a series of images of a thick sample at different angles (tilts) so that tomography can be applied to increase the resolution of the ticker sample. |
https://openminds.ebrains.eu/instances/technique/electronTomography |
http://id.nlm.nih.gov/mesh/2018/M0512939 |
JSON-LD
, Interlex
|
| electrooculography |
|
https://openminds.ebrains.eu/instances/technique/electrooculography |
|
JSON-LD
|
| electroporation |
A microbiology technique in which an electrical field is applied to cells in order to increase the permeability of the cell membrane. |
https://openminds.ebrains.eu/instances/technique/electroporation |
http://uri.interlex.org/tgbugs/uris/readable/technique/electroporation |
JSON-LD
, Interlex
|
| ensemble learning |
The term 'ensemble learning' refers to a group of techniques that allow the application of a combination of machine-learning methods and agggregate the results of those methods into one output. |
https://openminds.ebrains.eu/instances/technique/ensembleLearning |
|
JSON-LD
|
| enzyme-linked immunosorbent assay |
The 'enzyme-linked immunosorbent assay' is a commonly used analytical biochemistry assay for the quantitative determination of antibodies, first described by [Engvall and Perlmann (1972)](https://www.jimmunol.org/content/109/1/129.abstract). [adapted from [wikipedia](https://en.wikipedia.org/wiki/ELISA)] |
https://openminds.ebrains.eu/instances/technique/enzymeLinkedImmunosorbentAssay |
http://id.nlm.nih.gov/mesh/2018/M0007526 |
JSON-LD
, Interlex
|
| epidermal electrophysiology technique |
The term 'epidermal electrophysiology technique' describes a subclass of non-invasive electrophysiology techniques where one or several electrodes are placed on the outermost cell layer of an organism (epidermis) to measure electrical properties. |
https://openminds.ebrains.eu/instances/technique/epidermalElectrophysiologyTechnique |
|
JSON-LD
|
| epidural electrocorticography |
|
https://openminds.ebrains.eu/instances/technique/epiduralElectrocorticography |
|
JSON-LD
|
| epifluorescent microscopy |
Epifluorescent microscopy comprises all widefield microscopy techniques in which fluorescent molecules of an entire sample are excited through a permanent exposure of a light source of a specific wavelength. |
https://openminds.ebrains.eu/instances/technique/epifluorescentMicroscopy |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/243 |
JSON-LD
, Interlex
|
| extracellular electrophysiology |
In 'extracellular electrophysiology' electrodes are inserted into living tissue, but remain outside the cells in the extracellular environment to measure or stimulate electrical activity coming from adjacent cells, usually neurons. |
https://openminds.ebrains.eu/instances/technique/extracellularElectrophysiology |
|
JSON-LD
|
| eye movement tracking |
'Eye movement tracking' refers to a group of techniques used to measure the eye movement and/or position of a living specimen over a given period of time. |
https://openminds.ebrains.eu/instances/technique/eyeMovementTracking |
http://id.nlm.nih.gov/mesh/2018/M0493574 |
JSON-LD
, Interlex
|
| fixation technique |
Fixation is a technique to preserve specimen permanently as faithfully as possible compared to the living state. |
https://openminds.ebrains.eu/instances/technique/fixationTechnique |
|
JSON-LD
, Interlex
|
| fluorescence microscopy |
Fluorescence microscopy comprises any type of microscopy where the specimen can be made to fluoresce (emit energy as visible light), typically by illuminating it with light of specific wavelengths. |
https://openminds.ebrains.eu/instances/technique/fluorescenceMicroscopy |
http://purl.obolibrary.org/obo/CHMO_0000087 |
JSON-LD
, Interlex
|
| focused ion beam scanning electron microscopy |
Focused ion beam scanning electron microscopy is a serial section scanning electron microscopy technique where a focused ion beam is used to ablate the surface of a specimen. |
https://openminds.ebrains.eu/instances/technique/focusedIonBeamScanningElectronMicroscopy |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/245 |
JSON-LD
, Interlex
|
| functional magnetic resonance imaging |
|
https://openminds.ebrains.eu/instances/technique/functionalMagneticResonanceImaging |
|
JSON-LD
|
| gene expression measurement |
|
https://openminds.ebrains.eu/instances/technique/geneExpressionMeasurement |
|
JSON-LD
|
| gene knockin |
|
https://openminds.ebrains.eu/instances/technique/geneKnockin |
|
JSON-LD
|
| gene knockout |
|
https://openminds.ebrains.eu/instances/technique/geneKnockout |
|
JSON-LD
|
| general linear modeling |
|
https://openminds.ebrains.eu/instances/technique/generalLinearModeling |
|
JSON-LD
|
| genetic correlation analysis |
|
https://openminds.ebrains.eu/instances/technique/geneticCorrelationAnalysis |
|
JSON-LD
|
| genetic risk score |
A genetic risk score is an estimate of the cumulative contribution of genetic factors to a specific outcome of interest in an individual (Igo et al, 2019). |
https://openminds.ebrains.eu/instances/technique/geneticRiskScore |
|
JSON-LD
|
| genome-wide association study |
A 'genome-wide association study' is an analysis technique comparing the allele frequencies of all available (or a whole genome representative set of) polymorphic markers in unrelated individuals with a specific symptom or disease condition, and those of healthy controls to identify markers associated with a specific disease or condition. |
https://openminds.ebrains.eu/instances/technique/genomeWideAssociationStudy |
http://edamontology.org/topic_3517 |
JSON-LD
, Interlex
, Knowledge Space
|
| global signal regression |
A 'global signal regression' is a denoising technique where the global signal is removed from the time series of each voxel through linear regression. [adapted from: [Murphy & Fox, 2017](https://dx.doi.org/10.1016%2Fj.neuroimage.2016.11.052)] |
https://openminds.ebrains.eu/instances/technique/globalSignalRegression |
|
JSON-LD
|
| Golgi staining |
'Golgi staining' includes several silver staining techniques in which fixed tissue is impregnated with silver nitrate and potassium dichromate resulting in the complete staining of some nerve cells while other cells are not stained at all. [adapted from InterLex](http://uri.interlex.org/ilx_0104713) |
https://openminds.ebrains.eu/instances/technique/GolgiStaining |
http://uri.neuinfo.org/nif/nifstd/birnlex_2243 |
JSON-LD
, Interlex
|
| gradient-echo pulse sequence |
In magnetic resonance imaging, a 'gradient-echo pulse sequence' is a contrast generation technique that rapidly induces bulk changes in the spin magnetization of a sample by applying a series of carefully constructed pulses so that the change in the gradient of the magnetic field is maximized, trading contrast for speed (cf. [Hargreaves (2012)](https://doi.org/10.1002/jmri.23742)). |
https://openminds.ebrains.eu/instances/technique/gradientEchoPulseSequence |
|
JSON-LD
|
| Grubbs' test |
The 'Grubbs test' is a statistical test, first published by [Grubbs (1950)](https://doi.org/10.1214/aoms/1177729885), used to detect outliers in univariate data that are assumed to come from a normally distributed population. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Grubbs%27s_test)] |
https://openminds.ebrains.eu/instances/technique/GrubbsTest |
|
JSON-LD
|
| H&E staining |
An 'H&E staining' combines the two histological stains hematoxylin and eosin which highlight a large portion of microscopic anatomy in a tissue. It is therefore the most widely used stain in medical and histopathological diagnosis. |
https://openminds.ebrains.eu/instances/technique/HEStaining |
|
JSON-LD
|
| heavy metal negative staining |
In a 'heavy metal negative staining', a thin and amorphous film of heavy metal salts (e.g. uranyl acetate) is applied on a sample to reveal its structural details for electron microscopy. |
https://openminds.ebrains.eu/instances/technique/heavyMetalNegativeStaining |
|
JSON-LD
|
| hierarchical agglomerative clustering |
|
https://openminds.ebrains.eu/instances/technique/hierarchicalAgglomerativeClustering |
|
JSON-LD
|
| hierarchical clustering |
|
https://openminds.ebrains.eu/instances/technique/hierarchicalClustering |
|
JSON-LD
|
| hierarchical divisive clustering |
|
https://openminds.ebrains.eu/instances/technique/hierarchicalDivisiveClustering |
|
JSON-LD
|
| hierarchical phase-contrast tomography |
'Hierarchical phase-contrast tomography' is an X-ray technique which decouple field of view and resolution to image with cellular (micron) resolution [adapted from [UCL HiP-CT webpage](https://mecheng.ucl.ac.uk/hip-ct/)]. |
https://openminds.ebrains.eu/instances/technique/hierarchicalPhaseContrastTomography |
|
JSON-LD
|
| high-density electroencephalography |
|
https://openminds.ebrains.eu/instances/technique/highDensityElectroencephalography |
|
JSON-LD
|
| high-field functional magnetic resonance imaging |
|
https://openminds.ebrains.eu/instances/technique/highFieldFunctionalMagneticResonanceImaging |
|
JSON-LD
|
| high-field magnetic resonance imaging |
|
https://openminds.ebrains.eu/instances/technique/highFieldMagneticResonanceImaging |
|
JSON-LD
|
| high-resolution scanning |
|
https://openminds.ebrains.eu/instances/technique/high-resolutionScanning |
|
JSON-LD
|
| high-speed video recording |
|
https://openminds.ebrains.eu/instances/technique/high-speedVideoRecording |
|
JSON-LD
|
| high-throughput scanning |
'High-throughput scanning' is a technique for automatic creation of analog or digital images of a large number of samples. |
https://openminds.ebrains.eu/instances/technique/highThroughputScanning |
|
JSON-LD
|
| histochemistry |
|
https://openminds.ebrains.eu/instances/technique/histochemistry |
|
JSON-LD
|
| Hoechst staining |
A nuclear-specific staining technique where a Hoechst dye is used. |
https://openminds.ebrains.eu/instances/technique/HoechstStaining |
|
JSON-LD
|
| HPC simulation |
|
https://openminds.ebrains.eu/instances/technique/HPCSimulation |
|
JSON-LD
|
| ICA based denoising technique |
An 'ICA based denoising technique' removes independent components from input data to reduce noise while preserving the features of interest in the data. |
https://openminds.ebrains.eu/instances/technique/ICABasedDenoisingTechnique |
|
JSON-LD
|
| image distortion correction |
'Image distortion correction' is the general term for any image processing technique correcting optical or perspective aberrations of an image. |
https://openminds.ebrains.eu/instances/technique/imageDistortionCorrection |
|
JSON-LD
|
| image registration |
An 'image registration' is a process of bringing a set of images into the same coordinate system. |
https://openminds.ebrains.eu/instances/technique/imageRegistration |
|
JSON-LD
|
| immunohistochemistry |
In 'immunohistochemistry' antigens or haptens are detected and visualized in cells of a tissue sections by exploiting the principle of antibodies binding specifically to antigens in biological tissues. |
https://openminds.ebrains.eu/instances/technique/immunohistochemistry |
|
JSON-LD
|
| immunoprecipitation |
|
https://openminds.ebrains.eu/instances/technique/immunoprecipitation |
|
JSON-LD
|
| implant surgery |
|
https://openminds.ebrains.eu/instances/technique/implantSurgery |
|
JSON-LD
|
| in situ hybridisation |
|
https://openminds.ebrains.eu/instances/technique/inSituHybridisation |
|
JSON-LD
|
| independent component analysis |
|
https://openminds.ebrains.eu/instances/technique/independentComponentAnalysis |
|
JSON-LD
|
| infrared differential interference contrast video microscopy |
|
https://openminds.ebrains.eu/instances/technique/infraredDifferentialInterferenceContrastVideoMicroscopy |
http://uri.interlex.org/tgbugs/uris/readable/technique/IRDIC |
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, Interlex
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| injection |
|
https://openminds.ebrains.eu/instances/technique/injection |
|
JSON-LD
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| inter-subject analysis |
|
https://openminds.ebrains.eu/instances/technique/interSubjectAnalysis |
|
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|
| interpolation |
An 'interpolation' is an analysis technique that delivers estimates for new data points based on a range of a discrete set of known data points. |
https://openminds.ebrains.eu/instances/technique/interpolation |
|
JSON-LD
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| intra-subject analysis |
|
https://openminds.ebrains.eu/instances/technique/intraSubjectAnalysis |
|
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|
| intracellular electrophysiology |
A technique used to measure electrical properties of a single cell, e.g. a neuron. |
https://openminds.ebrains.eu/instances/technique/intracellularElectrophysiology |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/222 |
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, Interlex
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| intracellular injection |
|
https://openminds.ebrains.eu/instances/technique/intracellularInjection |
|
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|
| intracranial electroencephalography |
|
https://openminds.ebrains.eu/instances/technique/intracranialElectroencephalography |
|
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| intraperitoneal injection |
An 'intraperitoneal injection' is the administration of a substance into the peritoneum (abdominal cavity) via a needle or tube. |
https://openminds.ebrains.eu/instances/technique/intraperitonealInjection |
|
JSON-LD
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| intravenous injection |
An 'intravenous injection' is the administration of a substance into a vein or veins via a needle or tube. |
https://openminds.ebrains.eu/instances/technique/intravenousInjection |
|
JSON-LD
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| iontophoresis |
|
https://openminds.ebrains.eu/instances/technique/iontophoresis |
|
JSON-LD
|
| iontophoretic microinjection |
|
https://openminds.ebrains.eu/instances/technique/iontophoreticMicroinjection |
|
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|
| k-means clustering |
'k-means clustering' is a centroid-based cluster analysis technique that aims to partition n observations into a pre-defined number of k clusters by assigning each observation to the cluster with the nearest mean (centroid). |
https://openminds.ebrains.eu/instances/technique/k-meansClustering |
|
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| light microscopy |
Light microscopy, also referred to as optical microscopy, comprises any type of microscopy technique that uses visible light to generate magnified images of small objects. |
https://openminds.ebrains.eu/instances/technique/lightMicroscopy |
http://edamontology.org/topic_3385 |
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, Interlex
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| light sheet fluorescence microscopy |
Lightsheet fluorescence microscopy is a fluorescence microscopy technique that uses a thin sheet of light to excite only fluorophores within the plane of illumination. |
https://openminds.ebrains.eu/instances/technique/lightSheetFluorescenceMicroscopy |
http://uri.interlex.org/tgbugs/uris/readable/technique/lightSheetMicroscopyFluorescent |
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, Interlex
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| linear image registration |
A 'linear image registration' is a process of bringing a set of images into the same coordinate system using linear transformation. |
https://openminds.ebrains.eu/instances/technique/linearImageRegistration |
|
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| linear regression |
A 'linear regression' is an analysis approach for modelling the linear relationship between a scalar response and one or more explanatory variables. |
https://openminds.ebrains.eu/instances/technique/linearRegression |
|
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| linear transformation |
A 'linear transformation' is a linear mathematical function to map coordinates between two different coordinate systems while perserving straight lines. |
https://openminds.ebrains.eu/instances/technique/linearTransformation |
|
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| literature mining |
|
https://openminds.ebrains.eu/instances/technique/literatureMining |
|
JSON-LD
|
| magnetic resonance imaging |
'Magnetic resonance imaging' is a medical imaging technique that uses strong magnetic fields, magnetic field gradients, and radio waves to generate images of the anatomy and the physiological processes of the body. |
https://openminds.ebrains.eu/instances/technique/magneticResonanceImaging |
|
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, Interlex
|
| magnetic resonance spectroscopy |
|
https://openminds.ebrains.eu/instances/technique/magneticResonanceSpectroscopy |
|
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|
| magnetoencephalography |
'Magnetoencephalography' is a noninvasive neuroimaging technique for studying brain activity by recording magnetic fields produced by electrical currents occurring naturally in the brain, using very sensitive magnetometers. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Magnetoencephalography)] |
https://openminds.ebrains.eu/instances/technique/magnetoencephalography |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/163 |
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, Interlex
|
| manifold learning |
'manifold learning' refers to a group of machine learning algorithms for non-linear dimensionality reduction of high-dimensionalty data. |
https://openminds.ebrains.eu/instances/technique/manifoldLearning |
|
JSON-LD
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| Mann–Whitney U test |
The 'Mann–Whitney U test' is a nonparametric test of the null hypothesis that, for randomly selected values X and Y from two populations, the probability of X being greater than Y is equal to the probability of Y being greater than X. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Mann%E2%80%93Whitney_U_test)] |
https://openminds.ebrains.eu/instances/technique/MannWhitneyUTest |
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| mass spectrometry |
|
https://openminds.ebrains.eu/instances/technique/massSpectrometry |
|
JSON-LD
|
| mass univariate analysis |
A 'mass univariate analysis' is the statistical analysis of a massive number of simultaneously measured dependent variables via the performance of univariate hypothesis tests. |
https://openminds.ebrains.eu/instances/technique/massUnivariateAnalysis |
|
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| maximum likelihood estimation technique |
'Maximum likelihood estimation' is a statistical analysis technique that estimates the parameters of an assumed probability distribution for some observed data by maximizing a likelihood function so that, under the assumed statistical model, the observed data is most probable. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Maximum_likelihood_estimation)] |
https://openminds.ebrains.eu/instances/technique/maximumLikelihoodEstimation |
|
JSON-LD
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| maximum probability projection |
|
https://openminds.ebrains.eu/instances/technique/maximumProbabilityProjection |
|
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|
| meta-analysis |
|
https://openminds.ebrains.eu/instances/technique/metaAnalysis |
|
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|
| meta-analytic connectivity modeling |
|
https://openminds.ebrains.eu/instances/technique/metaAnalyticConnectivityModeling |
|
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|
| metadata parsing |
|
https://openminds.ebrains.eu/instances/technique/metadataParsing |
|
JSON-LD
|
| microtome sectioning |
A technique used to cut specimen in thin slices using a microtome. |
https://openminds.ebrains.eu/instances/technique/microtomeSectioning |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/212 |
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, Interlex
|
| model-based stimulation artifact correction |
The 'model-based stimulation artifact correction' is a model-based analysis technique for removing stimulation artifacts from intracranial electroencephalography signals to uncover the cortico-cortical evoked potentials caused by the stimulation (cf. [Trebaul et al. (2016)](https://doi.org/10.1016/j.jneumeth.2016.03.002)). |
https://openminds.ebrains.eu/instances/technique/modelBasedstimulationArtifactCorrection |
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| morphometric analysis |
|
https://openminds.ebrains.eu/instances/technique/morphometricAnalysis |
|
JSON-LD
|
| morphometry |
|
https://openminds.ebrains.eu/instances/technique/morphometry |
|
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|
| motion correction |
'Motion correction' is the general term for any preprocessing analysis technique used to correct for motion artifacts in imaging time-series. |
https://openminds.ebrains.eu/instances/technique/motionCorrection |
|
JSON-LD
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| movement tracking |
'Movement tracking' refers to a group of techniques used to measure the movement and/or position of an object, specimen, or anatomical parts of a specimen over a given period of time. |
https://openminds.ebrains.eu/instances/technique/movementTracking |
|
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| multi-compartment modeling |
|
https://openminds.ebrains.eu/instances/technique/multi-compartmentModeling |
|
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|
| multi-electrode extracellular electrophysiology |
|
https://openminds.ebrains.eu/instances/technique/multiElectrodeExtracellularElectrophysiology |
|
JSON-LD
|
| multi-scale individual component clustering |
'multi-scale individual component clustering' is a multi-scale, unsupervised cluster analysis technique to group individual, independent components of a single-object/single-subject independent component analysis (ICA) from an object-pool/subject-pool (cf. [Naveau et al, 2012](https://doi.org/10.1007/s12021-012-9145-2)). |
https://openminds.ebrains.eu/instances/technique/multi-scaleIndividualComponentClustering |
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|
| multi-voxel pattern analysis |
A 'multi-voxel pattern analysis' is considered as a supervised classification problem where a classifier attempts to capture the relationships between spatial patterns of functional magnetic resonance imaging activity and experimental conditions ([Mahmoudi et al., 2012](https://doi.org/10.1155/2012/961257), [Davatzikos et al., 2005](https://doi.org/10.1016/j.neuroimage.2005.08.009)). |
https://openminds.ebrains.eu/instances/technique/multiVoxelPatternAnalysis |
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|
| multiple linear regression |
A 'multiple linear regression' is a linear approach for modelling the relationship between a scalar response and multiple explanatory variables. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Linear_regression)] |
https://openminds.ebrains.eu/instances/technique/multipleLinearRegression |
|
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|
| multiple whole cell patch clamp |
|
https://openminds.ebrains.eu/instances/technique/multipleWholeCellPatchClamp |
|
JSON-LD
|
| myelin staining |
A technique used to selectively alter the appearance of myelin (sheaths) that surround the nerve cell axons. |
https://openminds.ebrains.eu/instances/technique/myelinStaining |
http://uri.neuinfo.org/nif/nifstd/birnlex_2248 |
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, Interlex
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| neuromorphic simulation |
|
https://openminds.ebrains.eu/instances/technique/neuromorphicSimulation |
|
JSON-LD
|
| Nissl staining |
The term 'Nissl staining' refers to various basic dyes (e.g., aniline, thionine, cresyl violet) that selectively label negatively charged molecules (e.g., DNA, RNA) and are therefore typically used to highlight important structural features of cell bodies. |
https://openminds.ebrains.eu/instances/technique/NisslStaining |
|
JSON-LD
|
| nonlinear image registration |
A 'nonlinear image registration' is a process of bringing a set of images into the same coordinate system using nonlinear transformation. |
https://openminds.ebrains.eu/instances/technique/nonlinearImageRegistration |
|
JSON-LD
|
| nonlinear transformation |
A 'nonlinear transformation' is a mathematical function to map coordinates between two different coordinate systems, not perserving straight lines. |
https://openminds.ebrains.eu/instances/technique/nonlinearTransformation |
|
JSON-LD
|
| nonrigid image registration |
A 'nonrigid image registration' is a process of bringing a set of images into the same coordinate system using nonrigid transformation. |
https://openminds.ebrains.eu/instances/technique/nonrigidImageRegistration |
|
JSON-LD
|
| nonrigid motion correction |
|
https://openminds.ebrains.eu/instances/technique/nonrigidMotionCorrection |
|
JSON-LD
|
| nonrigid transformation |
A 'nonrigid transformation' is a specific linear transformation using combinations of rotations, translations, reflections, scaling, shearing, and perspective projections to map coordinates between two coordinate spaces. |
https://openminds.ebrains.eu/instances/technique/nonrigidTransformation |
|
JSON-LD
|
| nucleic acid extraction |
'Nucleic acid extraction' refers to a group of techniques that all separate nucleic acids from proteins and lipids using three major processes: isolation, purification, and concentration. |
https://openminds.ebrains.eu/instances/technique/nucleicAcidExtraction |
|
JSON-LD
|
| nuisance regression |
'Nuisance regression' is an image processing technique which seeks to attenuate non-neural BOLD fluctuations from measurable noise sources such as scanner drift and head motion, as well as periodic physiological signals. [adapted from [Hallquist et al. 2013](https://doi.org/10.1016%2Fj.neuroimage.2013.05.116)] |
https://openminds.ebrains.eu/instances/technique/nuisanceRegression |
|
JSON-LD
|
| optogenetic inhibition |
Optogenetic inhibition is a genetic technique in which the activity of specific neuron populations is decreased using light of a particular wavelength. This can be achieved by expressing light-sensitive ion channels, pumps or enzymes specifically in the target neurons. |
https://openminds.ebrains.eu/instances/technique/optogeneticInhibition |
|
JSON-LD
|
| oral administration |
In an 'oral administration' a substance is taken through the mouth. |
https://openminds.ebrains.eu/instances/technique/oralAdministration |
|
JSON-LD
|
| organ extraction |
|
https://openminds.ebrains.eu/instances/technique/organExtraction |
|
JSON-LD
|
| patch clamp |
|
https://openminds.ebrains.eu/instances/technique/patchClamp |
|
JSON-LD
|
| pathway analysis |
A 'pathway analysis' refers to a group of techniques that aim to discover what biological themes, and which biomolecules, are crucial to understand biological pathways of (typically) high-throughput biological data (adapted from [García-Campos et al., 2015](https://doi.org/10.3389/fphys.2015.00383)). |
https://openminds.ebrains.eu/instances/technique/pathwayAnalysis |
http://edamontology.org/operation_3928 |
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, Interlex
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| performance profiling |
|
https://openminds.ebrains.eu/instances/technique/performanceProfiling |
|
JSON-LD
|
| perfusion fixation technique |
Perfusion fixation is a fixation technique to preserve specimen permanently as faithfully as possible compared to the living state by using the vascular system to distribute fixatives throughout the tissue. |
https://openminds.ebrains.eu/instances/technique/perfusionFixationTechnique |
|
JSON-LD
|
| perfusion technique |
Perfusion is a technique to distribute fluid through the circulatory system or lymphatic system to an organ or a tissue. |
https://openminds.ebrains.eu/instances/technique/perfusionTechnique |
|
JSON-LD
, Interlex
|
| perturbational complexity index measurement |
|
https://openminds.ebrains.eu/instances/technique/perturbationalComplexityIndexMeasurement |
|
JSON-LD
|
| phase synchronization analysis |
A 'phase synchronization analysis' detects and quantifies synchronization between two time series. |
https://openminds.ebrains.eu/instances/technique/phaseSynchronizationAnalysis |
|
JSON-LD
|
| phase-contrast x-ray imaging |
'Phase-contrast x-ray imaging' is a general term for different x-ray techniques that use changes in the phase of an x-ray beam passing through an object leading to images with improved soft tissue contrast without the application of a contrast medium. (adapted from [Wikipedia](https://en.wikipedia.org/wiki/Phase-contrast_X-ray_imaging)) |
https://openminds.ebrains.eu/instances/technique/phaseContrastXRayImaging |
|
JSON-LD
|
| phase‐contrast x‐ray computed tomography |
'Phase-contrast x-ray computed tomography' is a non-invasive x-ray imaging technique for three-dimensional observation of organic matter without application of a contrast medium ([Momose, Takeda, and Itai (1995)](https://doi.org/10.1063/1.1145931)). |
https://openminds.ebrains.eu/instances/technique/phaseContrastXRayComputedTomography |
|
JSON-LD
|
| photoactivation |
|
https://openminds.ebrains.eu/instances/technique/photoactivation |
|
JSON-LD
|
| photoinactivation |
|
https://openminds.ebrains.eu/instances/technique/photoinactivation |
|
JSON-LD
|
| photoplethysmography |
Photoplethysmography is a non-invasive technique to optically detect blood volume changes in the micro-vascular bed of tissue by measuring the transmissive absorption and/or the reflection of light by the skin. |
https://openminds.ebrains.eu/instances/technique/photoplethysmography |
http://id.nlm.nih.gov/mesh/2018/M0026056 |
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, Interlex
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| polarized light microscopy |
Polarized light microscopy comprises all optical microscopy techniques involving polarized light. |
https://openminds.ebrains.eu/instances/technique/polarizedLightMicroscopy |
http://id.nlm.nih.gov/mesh/2018/M0013816 |
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, Interlex
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| population receptive field mapping |
|
https://openminds.ebrains.eu/instances/technique/populationReceptiveFieldMapping |
|
JSON-LD
|
| positron emission tomography |
|
https://openminds.ebrains.eu/instances/technique/positronEmissionTomography |
|
JSON-LD
|
| pressure injection |
Pressure injection uses either air compression or mechanical pressure to eject a substance from a micropipette (from Veith et al., 2016; J.Vis.Exp. (109):53724; doi: 10.3791/53724). |
https://openminds.ebrains.eu/instances/technique/pressureInjection |
|
JSON-LD
|
| primary antibody staining |
|
https://openminds.ebrains.eu/instances/technique/primaryAntibodyStaining |
|
JSON-LD
|
| principal component analysis |
A 'principal component analysis' is a statistical technique for reducing the dimensionality of a dataset by linearly transforming the data into a new coordinate system where (most of) the variation in the data can be described with fewer dimensions than the initial data. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Principal_component_analysis)] |
https://openminds.ebrains.eu/instances/technique/principalComponentAnalysis |
|
JSON-LD
|
| probabilistic anatomical parcellation technique |
|
https://openminds.ebrains.eu/instances/technique/probabilisticAnatomicalParcellationTechnique |
|
JSON-LD
|
| probabilistic diffusion tractography |
|
https://openminds.ebrains.eu/instances/technique/probabilisticDiffusionTractography |
|
JSON-LD
|
| pseudo-continuous arterial spin labeling |
|
https://openminds.ebrains.eu/instances/technique/pseudoContinuousArterialSpinLabeling |
|
JSON-LD
|
| psychological testing |
'Psychological testing' is a psychometric measurement to evaluate a person's response to a psychological test according to carefully prescribed guidelines. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Psychological_testing)] |
https://openminds.ebrains.eu/instances/technique/psychologicalTesting |
|
JSON-LD
|
| pupillometry |
Pupillometry is the measurement of minute fluctuations in pupil diameter in response to a stimulus. |
https://openminds.ebrains.eu/instances/technique/pupillometry |
|
JSON-LD
|
| qualitative analysis |
'Qualitative analysis' uses subjective judgment to analyze data based on non-quantifiable information. The resulting data are typically nonnumerical. |
https://openminds.ebrains.eu/instances/technique/qualitativeAnalysis |
|
JSON-LD
|
| quantification |
|
https://openminds.ebrains.eu/instances/technique/quantification |
|
JSON-LD
|
| quantitative analysis |
|
https://openminds.ebrains.eu/instances/technique/quantitativeAnalysis |
|
JSON-LD
|
| quantitative magnetic resonance imaging |
|
https://openminds.ebrains.eu/instances/technique/quantitativeMagneticResonanceImaging |
|
JSON-LD
|
| receptive field mapping |
In 'receptive field mapping' a distinct set of physiological stimuli is used to evoke a sensory neuronal response in specific organisms to define its respective sensory space (receptive field). |
https://openminds.ebrains.eu/instances/technique/receptiveFieldMapping |
|
JSON-LD
|
| reconstruction technique |
A 'reconstruction technique' is able to re-build, re-assemble, re-create, or re-imagine something by applying (often mathematical) principles to physical evidence. |
https://openminds.ebrains.eu/instances/technique/reconstructionTechnique |
|
JSON-LD
|
| reporter gene based expression measurement |
|
https://openminds.ebrains.eu/instances/technique/reporterGeneBasedExpressionMeasurement |
|
JSON-LD
|
| reporter protein based expression measurement |
|
https://openminds.ebrains.eu/instances/technique/reporterProteinBasedExpressionMeasurement |
|
JSON-LD
|
| retinotopic mapping |
In 'retinotopic mapping' the retina is repeatedly stimulated in such a way that the response of neurons, particularly within the visual stream, can be mapped to the location of the stimulus on the retina. |
https://openminds.ebrains.eu/instances/technique/retinotopicMapping |
|
JSON-LD
|
| retrograde tracing |
Retrograde tracing is a technique used to trace neural connections from their point of termination (the synapse) to their source (the cell body). |
https://openminds.ebrains.eu/instances/technique/retrogradeTracing |
|
JSON-LD
|
| rigid image registration |
A 'rigid image registration' is a process of bringing a set of images into the same coordinate system using rigid transformation. |
https://openminds.ebrains.eu/instances/technique/rigidImageRegistration |
|
JSON-LD
|
| rigid motion correction |
|
https://openminds.ebrains.eu/instances/technique/rigidMotionCorrection |
|
JSON-LD
|
| rigid transformation |
A 'rigid transformation' is a specific linear transformation using combinations of rotations, translations, and reflections to map coordinates between two coordinate spaces, leaving the oject congruent. |
https://openminds.ebrains.eu/instances/technique/rigidTransformation |
|
JSON-LD
|
| RNA sequencing |
'RNA sequencing' refers to a group of techniques that are used to (directly or indirectly) determine the order of nucleotides (nucleic acid sequence) in RNA. |
https://openminds.ebrains.eu/instances/technique/RNASequencing |
http://purl.obolibrary.org/obo/OBI_0001177 |
JSON-LD
, Interlex
|
| rule-based modeling |
|
https://openminds.ebrains.eu/instances/technique/rule-basedModeling |
|
JSON-LD
|
| scanning electron microscopy |
Scanning electron microscopy is a microscopy technique to produce images of a specimen by scanning the surface with focused beam of electrons. |
https://openminds.ebrains.eu/instances/technique/scanningElectronMicroscopy |
http://uri.interlex.org/tgbugs/uris/readable/technique/scanningElectronMicroscopy |
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, Interlex
|
| scattered light imaging |
|
https://openminds.ebrains.eu/instances/technique/scatteredLightImaging |
|
JSON-LD
|
| SDS-digested freeze-fracture replica labeling |
|
https://openminds.ebrains.eu/instances/technique/SDSDigestedFreezeFractureReplicaLabeling |
|
JSON-LD
|
| secondary antibody staining |
|
https://openminds.ebrains.eu/instances/technique/secondaryAntibodyStaining |
|
JSON-LD
|
| seed-based correlation analysis |
|
https://openminds.ebrains.eu/instances/technique/seed-basedCorrelationAnalysis |
|
JSON-LD
|
| semantic anchoring |
|
https://openminds.ebrains.eu/instances/technique/semanticAnchoring |
|
JSON-LD
|
| semiquantitative analysis |
An analysis technique which constitutes or involves less than quantitative precision. |
https://openminds.ebrains.eu/instances/technique/semiquantitativeAnalysis |
|
JSON-LD
|
| serial block face scanning electron microscopy |
Serial block face scanning electron microscopy is a serial section scanning electron microscopy technique where an ultramicrotome is used to remove the surface layer of a specimen. |
https://openminds.ebrains.eu/instances/technique/serialBlockFaceScanningElectronMicroscopy |
|
JSON-LD
|
| serial section transmission electron microscopy |
Serial section transmission electron microscopy is a microscopy technique in which a beam of electrons is transmitted through multiple successive slices of a volumetric sample to produce images of the slices (e.g. for later 3D reconstruction). |
https://openminds.ebrains.eu/instances/technique/serialSectionTransmissionElectronMicroscopy |
|
JSON-LD
|
| Shapiro-Wilk test |
The 'Shapiro–Wilk test' is a statistical test of normality of a complete sample, first described by [Shapiro and Wilk (1965)](https://doi.org/10.1093/biomet/52.3-4.591). [adapted from [wikipedia](https://en.wikipedia.org/wiki/Shapiro%E2%80%93Wilk_test)] |
https://openminds.ebrains.eu/instances/technique/ShapiroWilkTest |
|
JSON-LD
|
| signal filtering technique |
'Signal filtering' is a signal processing technique used to remove or suppress unwanted components or features (e.g., certain frequencies) from a measured signal. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Filter_(signal_processing))] |
https://openminds.ebrains.eu/instances/technique/signalFilteringTechnique |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/151 |
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, Interlex
|
| signal processing technique |
'Signal processing' refers to a class of analysis techniques used to improve transmission, storage efficiency and subjective quality as well as to emphasize or detect components of interest in a measured signal. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Signal_processing)] |
https://openminds.ebrains.eu/instances/technique/signalProcessingTechnique |
http://uri.interlex.org/tgbugs/uris/readable/technique/sigproc |
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, Interlex
|
| silver staining |
A technique where the appearance of biological subcellular targets (e.g. proteins, RNA or DNA) is selectively alter by use of silver. |
https://openminds.ebrains.eu/instances/technique/silverStaining |
http://uri.neuinfo.org/nif/nifstd/nlx_152217 |
JSON-LD
, Interlex
|
| simulation |
|
https://openminds.ebrains.eu/instances/technique/simulation |
|
JSON-LD
|
| single cell RNA sequencing |
|
https://openminds.ebrains.eu/instances/technique/singleCellRNASequencing |
|
JSON-LD
|
| single electrode extracellular electrophysiology |
|
https://openminds.ebrains.eu/instances/technique/singleElectrodeExtracellularElectrophysiology |
|
JSON-LD
|
| single electrode juxtacellular electrophysiology |
|
https://openminds.ebrains.eu/instances/technique/singleElectrodeJuxtacellularElectrophysiology |
|
JSON-LD
|
| single gene analysis |
A 'single gene analysis' is a genetic test (sequencing technique) to check for any genetic changes in a specific gene. |
https://openminds.ebrains.eu/instances/technique/singleGeneAnalysis |
|
JSON-LD
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| single nucleotide polymorphism detection |
'Single nucleotide polymorphism detection' refers to a group of techniques that are used to scan for new polymorphisms and to determine the allele(s) of a known polymorphism in target sequences (adapted from [Kwok and Chen, 2003](https://doi.org/10.21775/cimb.005.043)). |
https://openminds.ebrains.eu/instances/technique/singleNucleotidePolymorphismDetection |
http://edamontology.org/operation_0484 |
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| slice timing correction |
'Slice timing correction' is a preprocessing technique applied to functional magnetic resonance image data in order to correct for temporal offsets between 2D image slices during the data acquisition. [adapted from [Parker and Razlighi, 2019](https://doi.org/10.3389/fnins.2019.00821)] |
https://openminds.ebrains.eu/instances/technique/sliceTimingCorrection |
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| sodium MRI |
'Sodium MRI' is a specialised magnetic resonance imaging technique that uses strong magnetic fields, magnetic field gradients, and radio waves to generate images of the distribution of sodium in the body. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Sodium_MRI)] |
https://openminds.ebrains.eu/instances/technique/sodiumMRI |
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| sonography |
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https://openminds.ebrains.eu/instances/technique/sonography |
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| Spearman's rank-order correlation |
The 'Spearman's rank-order correlation' is the nonparametric version of the Pearson product-moment correlation measuring the strength and direction of association between a set of two ranked variables. [adapted from [Laerd.com](https://statistics.laerd.com/statistical-guides/spearmans-rank-order-correlation-statistical-guide.php)] |
https://openminds.ebrains.eu/instances/technique/SpearmansRankOrderCorrelation |
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| spectral power auto-segmentation technique |
A 'spectral power auto-segmentation technique' makes use of the power spectrum along the time axis of individual pixels or voxels in an image to automatically generate a segmentation. |
https://openminds.ebrains.eu/instances/technique/spectralPowerAutoSegmentationTechnique |
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| spike sorting |
'Spike sorting' is a class of techniques used in the analysis of extracellular electrophysiological data to extract the activity of one or more neurons from the background electrical noise by making use of the typical waveforms action potentials (spikes) create in the recorded neuronal signal. |
https://openminds.ebrains.eu/instances/technique/spikeSorting |
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| spin echo pulse sequence |
In magnetic resonance imaging, a 'spin echo pulse sequence' is a contrast generation technique that induces bulk changes in the spin magnetization of a sample by applying sequential pulses of resonant electromagnetic waves at different angles (cf. [Fonseca (2013)](https://doi.org/10.5772/53693)). |
https://openminds.ebrains.eu/instances/technique/spinEchoPulseSequence |
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| stereoelectroencephalography |
In 'stereoelectroencephalography' depth electrodes (typically linear electrode arrays) are stereotactically implanted in the brain of a subject in order to record or stimulate electrographic activity of otherwise inaccessible brain regions. [cf. [wikipedia](https://en.wikipedia.org/wiki/Stereoelectroencephalography), or [Gholipour et al. 2020](https://doi.org/10.1016/j.clineuro.2019.105640)] |
https://openminds.ebrains.eu/instances/technique/stereoelectroencephalography |
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| stereology |
An imaging assay that is used for the three-dimensional interpretation of planar sections of materials or tissues. |
https://openminds.ebrains.eu/instances/technique/stereology |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/79 |
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| stereotactic surgery |
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https://openminds.ebrains.eu/instances/technique/stereotacticSurgery |
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| stochastic online matrix factorization |
'Stochastic online matrix factorization' is a matrix-factorization algorithm that scales to input matrices with both huge number of rows and columns [(Mensch et al., 2018)](https://doi.org/10.1109/TSP.2017.2752697). |
https://openminds.ebrains.eu/instances/technique/stochasticOnlineMatrixFactorization |
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| structural covariance analysis |
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https://openminds.ebrains.eu/instances/technique/structuralCovarianceAnalysis |
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| structural neuroimaging |
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https://openminds.ebrains.eu/instances/technique/structuralNeuroimaging |
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| subcutaneous injection |
An 'subcutenous injection' is the administration of a substance under all the layers of the skin via a needle or tube. |
https://openminds.ebrains.eu/instances/technique/subcutaneousInjection |
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| subdural electrocorticography |
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https://openminds.ebrains.eu/instances/technique/subduralElectrocorticography |
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| subliminal stimulation |
'Subliminal stimulation' is a technique providing any sensory stimuli below an individual's threshold for conscious perception (adapted from [wikipedia](https://en.wikipedia.org/wiki/Subliminal_stimuli)) |
https://openminds.ebrains.eu/instances/technique/subliminalStimulation |
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| subliminal visual simulation |
'Subliminal visual simulation' is a technique providing visual stimuli below an indivdual's threshold for conscious perception [adapted from [wikipedia](https://en.wikipedia.org/wiki/Subliminal_stimuli)] |
https://openminds.ebrains.eu/instances/technique/subliminalVisualSimulation |
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| support-vector machine classifier |
A 'support-vector machine classifier' is a supervised machine learning technique that analyzes data for classification. |
https://openminds.ebrains.eu/instances/technique/supportVectorMachineClassifier |
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| support-vector regression algorithm |
A 'Support-Vector Regression Algorithm' is a supervised machine learning technique used to estimate the relationship between a dependent and a number of independent variables. |
https://openminds.ebrains.eu/instances/technique/supportVectorMachineRegression |
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| surface projection |
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https://openminds.ebrains.eu/instances/technique/surfaceProjection |
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| SWITCH immunohistochemistry |
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https://openminds.ebrains.eu/instances/technique/SWITCHImmunohistochemistry |
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| T1 pulse sequence |
In magnetic resonance imaging, a 'T1 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to recover (spin-lattice relaxation) before measuring the magnetic resonance signal by changing the repetition time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)] |
https://openminds.ebrains.eu/instances/technique/T1PulseSequence |
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| T2 pulse sequence |
In magnetic resonance imaging, a 'T2 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to decay (spin-spin relaxation) before measuring the magnetic resonance signal by changing the echo time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)] |
https://openminds.ebrains.eu/instances/technique/T2PulseSequence |
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| TDE clearing |
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https://openminds.ebrains.eu/instances/technique/TDEClearing |
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| temporal filtering |
'Temporal filtering' is a functional image signal processing technique that aims to remove or attenuate frequencies that vary along the time axis of the raw signal. [adapted from [Wikibooks](https://en.wikibooks.org/wiki/Neuroimaging_Data_Processing/Processing/Steps/Temporal_Filtering)] |
https://openminds.ebrains.eu/instances/technique/temporalFiltering |
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| tetrode extracellular electrophysiology |
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https://openminds.ebrains.eu/instances/technique/tetrodeExtracellularElectrophysiology |
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| time-of-flight magnetic resonance angiography |
'Time-of-flight magnetic resonance angiography' is a non-invasive, non-contrast-enhanced technique used to visualize both arterial and venous vessels with high spatial resolution. Note: it provides no information regarding directionality nor flow velocity quantification. [adapted from: [Ferreira and Ramalho, 2013](https://doi.org/10.1002/9781118434550.ch7)] |
https://openminds.ebrains.eu/instances/technique/time-of-flightMagneticResonanceAngiography |
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| Timm's staining |
A technique used to selectively visualize a variety of metals (e.g. zinc, copper, iron) in biological tissue based on sulphide-precipitation of metals in the tissue. |
https://openminds.ebrains.eu/instances/technique/TimmsStaining |
http://uri.neuinfo.org/nif/nifstd/birnlex_2248 |
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| tissue clearing |
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https://openminds.ebrains.eu/instances/technique/tissueClearing |
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| tract tracing |
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https://openminds.ebrains.eu/instances/technique/tractTracing |
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| tractography |
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https://openminds.ebrains.eu/instances/technique/tractography |
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| transcardial perfusion fixation technique |
Transcardial perfusion fixation is a technique to distribute fixatives throughout tissue via the heart. |
https://openminds.ebrains.eu/instances/technique/transcardialPerfusionFixationTechnique |
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| transcardial perfusion technique |
Transcardial perfusion is a technique to distribute fluid throughout tissue via the heart. |
https://openminds.ebrains.eu/instances/technique/transcardialPerfusionTechnique |
http://uri.interlex.org/tgbugs/uris/indexes/ontologies/methods/167 |
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| transformation |
A 'transformation' is a mathematical function to map coordinates between two different coordinate systems. |
https://openminds.ebrains.eu/instances/technique/transformation |
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| transmission electron microscopy |
Transmission electron microscopy is a microscopy technique in which a beam of electrons is transmitted through a specimen to produce an image. |
https://openminds.ebrains.eu/instances/technique/transmissionElectronMicroscopy |
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| two-photon fluorescence microscopy |
Two-photon fluorescence microscopy is a fluorescence microscopy technique for living tissue which is based on the simultaneous excitation by two photons with longer wavelength than the emitted light. |
https://openminds.ebrains.eu/instances/technique/twoPhotonFluorescenceMicroscopy |
http://uri.interlex.org/tgbugs/uris/readable/technique/twoPhoton |
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| ultra high-field functional magnetic resonance imaging |
'Ultra high-field functional magnetic resonance imaging' comprises all functional MRI techniques conducted with a MRI scanner with a magnetic field strength equal or above 7 Tesla. |
https://openminds.ebrains.eu/instances/technique/ultraHighFieldFunctionalMagneticResonanceImaging |
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| ultra high-field magnetic resonance imaging |
'Ultra high-field magnetic resonance imaging' comprises all structural MRI techniques conducted with a MRI scanner with a magnetic field strength equal or above 7 Tesla. |
https://openminds.ebrains.eu/instances/technique/ultraHighFieldMagneticResonanceImaging |
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| ultra high-field magnetic resonance spectroscopy |
'Ultra high-field magnetic resonance spectroscopy' comprises all MRS techniques conducted with a MRI scanner with a magnetic field strength equal or above 7 Tesla. |
https://openminds.ebrains.eu/instances/technique/ultraHighFieldMagneticResonanceSpectroscopy |
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| vibratome sectioning |
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https://openminds.ebrains.eu/instances/technique/vibratomeSectioning |
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| video annotation |
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https://openminds.ebrains.eu/instances/technique/videoAnnotation |
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| video tracking |
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https://openminds.ebrains.eu/instances/technique/videoTracking |
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| video-oculography |
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https://openminds.ebrains.eu/instances/technique/video-oculography |
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| virus-mediated transfection |
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https://openminds.ebrains.eu/instances/technique/virus-mediatedTransfection |
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| voltage clamp |
'Voltage clamp' comprises all experimental techniques in which the membrane potential (voltage) is constantly changed to a desired value by adding the necessary current to the cell. |
https://openminds.ebrains.eu/instances/technique/voltageClamp |
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| voltage sensitive dye imaging |
'Voltage sensitive dye imaging' is an experimental technique to measure neuronal population activity from in vivo brains or live brain slices by transducing changes in the cell membrane potential into changes of fluorescence emmission by an employed exogenous chemical agent. |
https://openminds.ebrains.eu/instances/technique/voltageSensitiveDyeImaging |
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| voxel-based morphometry |
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https://openminds.ebrains.eu/instances/technique/voxel-basedMorphometry |
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| Ward clustering |
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https://openminds.ebrains.eu/instances/technique/WardClustering |
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| weighted correlation network analysis |
Weighted correlation network analysis is a widely used data mining method for studying networks based on pairwise correlations between variables. While it can be applied to most high-dimensional data sets, it has been most widely used in genomic applications. [adopted from: [wikipedia](https://en.wikipedia.org/wiki/Weighted_correlation_network_analysis)] |
https://openminds.ebrains.eu/instances/technique/weightedCorrelationNetworkAnalysis |
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| whole cell patch clamp |
'Whole cell patch clamp' is a patch clamp technique where the pipette is sealed onto a cell membrane applying enough suction to rupture the membrane patch in order to provide access from the interior of the pipette to the intracellular space of the cell. |
https://openminds.ebrains.eu/instances/technique/wholeCellPatchClamp |
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| whole genome sequencing |
'Whole genome sequencing' is a genetic test (sequencing technique) to determine the entire, or nearly the entire, DNA sequence of an organism's genome at a single time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Whole_genome_sequencing)] |
https://openminds.ebrains.eu/instances/technique/wholeGenomeSequencing |
http://id.nlm.nih.gov/mesh/2018/M000621306 |
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| widefield fluorescence microscopy |
'Widefield fluorescence microscopy' comprises all microscopy techniques in which fluorescent molecules of an entire sample are excited through a permanent exposure of a light source of a specific wavelength. |
https://openminds.ebrains.eu/instances/technique/widefieldFluorescenceMicroscopy |
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| z-score analysis |
The 'z-score analysis' is a statistical normalization technique where the z-score is calculated by subtracting the population mean from an individual raw score (observed data point) and dividing the difference by the population standard deviation. [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Standard_score)] |
https://openminds.ebrains.eu/instances/technique/zScoreAnalysis |
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