Online Use Cases¶
- Molecular level
- Calculate protein-protein bimolecular association rate constants with webSDA
- Analyse the results of a Brownian dynamics (BD) simulation for calculating protein-protein association rate constants
- Calculate the electrostatic potential of a protein from its atomic structure
- Compare the electrostatic potentials surrounding a set of protein isoforms with multipipsa
- Compare a specific region of the electrostatic potentials surrounding a set of protein isoforms with multipipsa
- Identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms
- Predict protein interaction surface with the ARDOCK server
- Preparing a protein to run an atomistic Molecular Dynamics simulation
- Preparing a protein-ligand complex to run an atomistic Molecular Dynamics simulation
- Small molecule force field parametrization for atomistic Molecular Dynamics simulations
- Subcellular level
- Trace Analysis
- Morphology Analysis
- Single Cell Building
- Circuit Building
- Single Cell In Silico Experiments
- Small Circuit In Silico Experiments
- Brain area circuit in silico experiments
- HBP Validation Framework
- Highly Integrated Workflows
- NEST Desktop